Anchored HTML File of EIDs

	WEB-based GEne SeT AnaLysis Toolkit

	*Translating gene lists into biological insights...*

User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

The results for each enriched gene sets are listed in this table.
For each gene set, the first row lists database name, gene set name , and corresponding gene set ID.
The second row lists the following statistics:

C: the number of reference genes in the category
O: the number of genes in the gene set and also in the category
E: the expected number in the category
R: ratio of enrichment
rawP: p value from hypergeometric test
adjP: p value adjusted by the multiple test adjustment

Finally, genes in the pathway are listed. For each gene, the table lists the user uploaded ID and value (optional), Entrez ID, Ensembl Gene Stable ID, Gene symbol, and description. Ensembl Gene Stable ID and Entrez Gene ID are linked to the Ensembl and Entrez Gene databases, respectively.

Database:KEGG pathway Name:Spliceosome ID:03040
C=127; O=4; E=0.12; R=33.13; rawP=6.67e-06; adjP=2.67e-05
Index	UserID	Value	Gene Symbol	Gene Name	EntrezGene	Ensembl
1	ENSG00000119707	NA	RBM25	RNA binding motif protein 25	58517	ENSG00000119707
2	ENSG00000079134	NA	THOC1	THO complex 1	9984	ENSG00000079134
3	ENSG00000113649	NA	TCERG1	transcription elongation regulator 1	10915	ENSG00000113649
4	ENSG00000163714	NA	U2SURP	U2 snRNP-associated SURP domain containing	23350	ENSG00000163714

Database:KEGG pathway Name:Hepatitis C ID:05160
C=134; O=2; E=0.13; R=15.70; rawP=0.0073; adjP=0.0146
Index	UserID	Value	Gene Symbol	Gene Name	EntrezGene	Ensembl
1	ENSG00000074211	NA	PPP2R2C	protein phosphatase 2, regulatory subunit B, gamma	5522	ENSG00000074211
2	ENSG00000186350	NA	RXRA	retinoid X receptor, alpha	6256	ENSG00000186350

Database:KEGG pathway Name:Endocytosis ID:04144
C=201; O=2; E=0.19; R=10.47; rawP=0.0157; adjP=0.0209
Index	UserID	Value	Gene Symbol	Gene Name	EntrezGene	Ensembl
1	ENSG00000153317	NA	ASAP1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	50807	ENSG00000153317
2	ENSG00000110047	NA	EHD1	EH-domain containing 1	10938	ENSG00000110047

Database:KEGG pathway Name:Pathways in cancer ID:05200
C=326; O=2; E=0.31; R=6.45; rawP=0.0385; adjP=0.0385
Index	UserID	Value	Gene Symbol	Gene Name	EntrezGene	Ensembl
1	ENSG00000161958	NA	FGF11	fibroblast growth factor 11	2256	ENSG00000161958
2	ENSG00000186350	NA	RXRA	retinoid X receptor, alpha	6256	ENSG00000186350

WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).